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1

[Astronomers' Universe] On the Inside of a Marble ||

Year:

2017

Language:

english

File:

PDF, 1.45 MB

english, 2017

2

Ab-Initio Protein Folding and Small Molecule Dissociation by Potential Energy Based Biased Molecular Dynamics

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

3

A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Interhelical Motions Revealed

Salmon, Loïc, Bascom, Gavin, Andricioaei, Ioan, Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 2.15 MB

english, 2013

4

Design, Synthesis, and Activity of a Series of Arylpyrid-3-ylmethanones as Type I Positive Allosteric Modulators of α7 Nicotinic Acetylcholine Receptors

Hogenkamp, Derk J., Ford-Hutchinson, Thomas A., Li, Wen-Yen, Whittemore, Edward R., Yoshimura, Ryan F., Tran, Minhtam B., Johnstone, Timothy B. C., Bascom, Gavin D., Rollins, Hannah, Lu, Lena, Gee, Ke

Journal:

Journal of Medicinal Chemistry

Year:

2013

Language:

english

File:

PDF, 776 KB

english, 2013

5

Simulated Single-Molecule FRET Trajectories: A Comparative Analysis Between Three Telomeric G-quadruplexes

Bascom, Gavin D., Guinn, Tia, Andricioaei, Ioan

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

6

Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13 C Relaxation and Molecular Dynamics Simulations

Nikolova, Evgenia N., Bascom, Gavin D., Andricioaei, Ioan, Al-Hashimi, Hashim M.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.43 MB

english, 2012

7

Single-Walled Carbon Nanotubes Modulate the B- to A-DNA Transition

Bascom, Gavin, Andricioaei, Ioan

Journal:

The Journal of Physical Chemistry C

Year:

2014

Language:

english

File:

PDF, 2.82 MB

english, 2014

8

Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements

Bascom, Gavin D, Sanbonmatsu, Karissa Y., Schlick, Tamar

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 4.71 MB

english, 2016

9

Linking Chromatin Fibers to Gene Folding by Hierarchical Looping

Bascom, Gavin, Schlick, Tamar

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 2.42 MB

english, 2017

10

Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion

Bascom, Gavin D, Kim, Taejin, Schlick, Tamar

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 13.30 MB

english, 2017

11

Nuclear Architecture and Dynamics || Mesoscale Modeling of Chromatin Fibers

D. Bascom, Gavin

Year:

2018

Language:

english

File:

PDF, 574 KB

english, 2018

12

Chromatin Fiber Folding Directed by Cooperative Histone Tail Acetylation and Linker Histone Binding

Bascom, Gavin D., Schlick, Tamar

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 5.28 MB

english, 2018

13

Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub

Bascom, Gavin D., Myers, Christopher G., Schlick, Tamar

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 2.46 MB

2019

14

Scaling molecular dynamics beyond 100,000 processor cores for large‐scale biophysical simulations

Jung, Jaewoon, Nishima, Wataru, Daniels, Marcus, Bascom, Gavin, Kobayashi, Chigusa, Adedoyin, Adetokunbo, Wall, Michael, Lappala, Anna, Phillips, Dominic, Fischer, William, Tung, Chang‐Shung, Schlick,

Journal:

Journal of Computational Chemistry

Year:

2019

Language:

english

File:

PDF, 2.12 MB

english, 2019

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